Aug 6, 2016 08:56 PM
(This post was last modified: Aug 6, 2016 09:13 PM by C C.)
There is no such thing as a ‘good’ or a ‘bad’ microbe
https://aeon.co/essays/there-is-no-such-...ad-microbe
EXCERPT: [...] Today, we know this view is wrong – as I explain in my new book "I Contain Multitudes". Sure, some bacteria can cause disease, but they are in the minority. Most are harmless, and many are even beneficial. We now know that the trillions of microbes that share our bodies – the so-called microbiome – are an essential part of our lives. Far from making us sick, they can protect us from disease; they also help digest our food, train our immune system, and perhaps even influence our behaviour. These discoveries have shifted the narrative. Many people now see microbes as allies to be protected. Magazines regularly warn that antibiotics and sanitisers might be harming our health by destroying our microscopic support system. Slowly, the view that ‘all bacteria must be killed’ is giving ground to ‘bacteria are our friends and want to help us’.
The problem is that the latter view is just as wrong as the former. We cannot simply assume that a particular microbe is ‘good’ just because it lives inside us. There’s really no such thing as a ‘good microbe’ or a ‘bad microbe’. These broad-brush terms belong in children’s stories. They are ill-suited for describing the messy, fractious, contextual relationships of the natural world. In reality, bacteria exist along a continuum of lifestyles....
New virus found during investigation of largemouth bass fish kill
https://www.sciencedaily.com/releases/20...230107.htm
RELEASE: A new virus has been identified in association with a die-off of largemouth bass in Pine Lake in Wisconsin's Forest County.
The previously unknown virus was isolated at the U.S. Fish and Wildlife Service's La Crosse Fish Health Center from dead fish collected by the Wisconsin Department of Natural Resources (DNR) during an investigation into a May 2015 fish kill in the northeastern Wisconsin lake.
The virus's genome was sequenced at a "virus hunting laboratory" operated by Tony Goldberg in the Department of Pathobiological Sciences at the University of Wisconsin-Madison's School of Veterinary Medicine. With the genome in hand, Goldberg and his colleagues scoured genetic databases to see if the virus was known or something novel.
The pathogen, according to Goldberg, was indeed new to science and has been dubbed largemouth bass reovirus. It has yet to be directly linked to fish mortality, explains Goldberg. However, the virus is a distant relative of other viruses associated with disease in other fish species, making it a key suspect in the Pine Lake fish kill.
"We can't say if it is directly responsible for fish mortality yet," says Goldberg. "But these kinds of viruses are known pathogens of fish, so we would be prudent to be concerned about it."
The new virus is described this week in the online version of the Journal of General Virology in a research report authored by Goldberg and colleagues from the Fish and Wildlife Service and the DNR. Its discovery comes against the backdrop of a deadly fish pathogen, viral hemorrhagic septicemia virus, which was found in 2006 in Lake Winnebago. Viral hemorrhagic septicemia virus has since been found in lakes Michigan and Superior and, should it spread, poses a threat to Wisconsin's inland fisheries, including iconic species such as musky, pike, bass, panfish and trout.
"Largemouth bass reovirus is only the second representative of its group of viruses," notes Goldberg, an epidemiologist, world expert on emerging infectious disease, and associate director of research at the UW-Madison Global Health Institute. "This family of viruses are emerging pathogens that infect all sorts of animals. They cause kills in marine and freshwater fisheries, including in wild and farmed populations."
Although the virus was discovered in association with a fish kill, more work is needed to understand if it is the primary culprit, Goldberg says. However, large fish kills involving a single species of fish such as largemouth bass have not been previously recorded at Pine Lake, making the virus a suspicious finding.
Should the virus be directly implicated in fish mortality, it will pose a new challenge in the control of fish disease in Wisconsin. Anglers spend roughly $2.1 billion annually in the state, according to the DNR, and the state has an aquaculture industry with an estimated $21 million annual economic impact. The Great Lakes together have a commercial fishery valued at $23 million annually.
"This is a classic example of how science is essential for managing our natural resources and the economic benefits they bring to Wisconsin," says Goldberg. "Without strong science, Wisconsin cannot hope to respond effectively to these types of emerging problems."
Identifying the new virus was made possible by "next generation sequencing" technologies. These methods enable biologists to sequence millions of molecules of genetic material in a sample and then use powerful computers to decipher the results. As the technology becomes more accessible, Goldberg expects other fish viruses to be found.
"The take-home message is that you don't have to fly to the ends of the Earth to find examples of unknown, emerging diseases," says Goldberg. "We can find them right here in Wisconsin."
There is no evidence that the new virus poses a risk to human health.
https://aeon.co/essays/there-is-no-such-...ad-microbe
EXCERPT: [...] Today, we know this view is wrong – as I explain in my new book "I Contain Multitudes". Sure, some bacteria can cause disease, but they are in the minority. Most are harmless, and many are even beneficial. We now know that the trillions of microbes that share our bodies – the so-called microbiome – are an essential part of our lives. Far from making us sick, they can protect us from disease; they also help digest our food, train our immune system, and perhaps even influence our behaviour. These discoveries have shifted the narrative. Many people now see microbes as allies to be protected. Magazines regularly warn that antibiotics and sanitisers might be harming our health by destroying our microscopic support system. Slowly, the view that ‘all bacteria must be killed’ is giving ground to ‘bacteria are our friends and want to help us’.
The problem is that the latter view is just as wrong as the former. We cannot simply assume that a particular microbe is ‘good’ just because it lives inside us. There’s really no such thing as a ‘good microbe’ or a ‘bad microbe’. These broad-brush terms belong in children’s stories. They are ill-suited for describing the messy, fractious, contextual relationships of the natural world. In reality, bacteria exist along a continuum of lifestyles....
New virus found during investigation of largemouth bass fish kill
https://www.sciencedaily.com/releases/20...230107.htm
RELEASE: A new virus has been identified in association with a die-off of largemouth bass in Pine Lake in Wisconsin's Forest County.
The previously unknown virus was isolated at the U.S. Fish and Wildlife Service's La Crosse Fish Health Center from dead fish collected by the Wisconsin Department of Natural Resources (DNR) during an investigation into a May 2015 fish kill in the northeastern Wisconsin lake.
The virus's genome was sequenced at a "virus hunting laboratory" operated by Tony Goldberg in the Department of Pathobiological Sciences at the University of Wisconsin-Madison's School of Veterinary Medicine. With the genome in hand, Goldberg and his colleagues scoured genetic databases to see if the virus was known or something novel.
The pathogen, according to Goldberg, was indeed new to science and has been dubbed largemouth bass reovirus. It has yet to be directly linked to fish mortality, explains Goldberg. However, the virus is a distant relative of other viruses associated with disease in other fish species, making it a key suspect in the Pine Lake fish kill.
"We can't say if it is directly responsible for fish mortality yet," says Goldberg. "But these kinds of viruses are known pathogens of fish, so we would be prudent to be concerned about it."
The new virus is described this week in the online version of the Journal of General Virology in a research report authored by Goldberg and colleagues from the Fish and Wildlife Service and the DNR. Its discovery comes against the backdrop of a deadly fish pathogen, viral hemorrhagic septicemia virus, which was found in 2006 in Lake Winnebago. Viral hemorrhagic septicemia virus has since been found in lakes Michigan and Superior and, should it spread, poses a threat to Wisconsin's inland fisheries, including iconic species such as musky, pike, bass, panfish and trout.
"Largemouth bass reovirus is only the second representative of its group of viruses," notes Goldberg, an epidemiologist, world expert on emerging infectious disease, and associate director of research at the UW-Madison Global Health Institute. "This family of viruses are emerging pathogens that infect all sorts of animals. They cause kills in marine and freshwater fisheries, including in wild and farmed populations."
Although the virus was discovered in association with a fish kill, more work is needed to understand if it is the primary culprit, Goldberg says. However, large fish kills involving a single species of fish such as largemouth bass have not been previously recorded at Pine Lake, making the virus a suspicious finding.
Should the virus be directly implicated in fish mortality, it will pose a new challenge in the control of fish disease in Wisconsin. Anglers spend roughly $2.1 billion annually in the state, according to the DNR, and the state has an aquaculture industry with an estimated $21 million annual economic impact. The Great Lakes together have a commercial fishery valued at $23 million annually.
"This is a classic example of how science is essential for managing our natural resources and the economic benefits they bring to Wisconsin," says Goldberg. "Without strong science, Wisconsin cannot hope to respond effectively to these types of emerging problems."
Identifying the new virus was made possible by "next generation sequencing" technologies. These methods enable biologists to sequence millions of molecules of genetic material in a sample and then use powerful computers to decipher the results. As the technology becomes more accessible, Goldberg expects other fish viruses to be found.
"The take-home message is that you don't have to fly to the ends of the Earth to find examples of unknown, emerging diseases," says Goldberg. "We can find them right here in Wisconsin."
There is no evidence that the new virus poses a risk to human health.